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Primeur weekly 2013-11-25

Special

Xyratex announces ClusterStor 9000 ...

Univa Corporation and Penguin Computing announce reseller agreement ...

SysFera-DS Version 4.0 for HPC management improves remote visualization and extends Cloud support ...

Supermicro debuts powerful 4U 8x GPU SuperServer optimized for the new NVIDIA Tesla K40 GPU accelerator ...

NVIDIA launches world's fastest accelerator for supercomputing and Big Data analytics ...

Numascale shared memory cluster set to unlock massive data sets and ease HPC programming at University of Oslo and throughout Europe ...

HP drives clients to TOP500 list of fastest supercomputers ...

IBM ranked no. 1 on the Graph500 supercomputing list ...

University of Reims Romeo supercomputer ranked 5th of the Green500 list ...

SGI supports new NVIDIA Tesla K40 GPU accelerators delivering 10x performance ...

Mellanox Connect-IB FDR InfiniBand adapters with NVIDIA GPUDirect RDMA technology provide superior GPU-based cluster performance ...

Adaptive Computing introduces Moab Task Manager to increase efficiency of short computing jobs ...

DataDirect Networks Web Object Scaler to provide a multi-PB storage Cloud to enable collaborative data sharing across Florida research universities ...

KALRAY announces world's first hyper-scalable 1000+ cores MIMD processor architecture for next generation exaflop supercomputers ...

IBM and NVIDIA to supercharge corporate data centre applications and next-generation supercomputers ...

Research institutions push the boundaries of supercomputing with Dell ...

Scientists "burst" supercomputing record with bubble collapse simulation ...

UK Atomic Weapons Establishment advances science-based programme with SGI supercomputers ...

Argonne and RIKEN sign MOU in support of petascale computing ...

Penguin Computing updates densest GPU compute solution with NVIDIA Tesla K40 GPU accelerators ...

International networks to aid global research collaborations in climate, bioinformatics and computer science ...

Convey Computer to OEM Dell servers to accelerate data intensive applications for data centres ...

Mellanox Connect-IB FDR InfiniBand adapters accelerate Purdue University's supercomputer to petascale-class performance ...

Penguin Computing announces world's densest X86 supercomputers that leverage OCP designs ...

The Cloud

Altair announces general availability of Display Manager ...

Cloud Software Programme published a definitive guide to success in the Cloud ...

Desktop Grids

New BOINC installer includes VirtualBox ...

EuroFlash

Open Knowledge promotes fast, creative innovation across sectors ...

Cray awarded $30 million contract to expand the Cray XC30 supercomputer at the High Performance Computing Center of University of Stuttgart ...

CSC deploys an energy-efficient Bull supercomputer ...

Scientists from Forschungszentrum Juelich announce the successful installation of a first Blue Gene Active Storage system worldwide ...

Launch of E-Biothon, a networked platform for the acceleration and advancement of bioinformatics research ...

Database consulting company MonetDB Solutions for Big Data newest spin-off CWI ...

Altair raises the bar for secure HPC workload management ...

USFlash

The University of Tsukuba in Japan puts Cray CS300 cluster supercomputer into production ...

SGI and Extreme Networks partner to bring high performance Big Data and Hadoop solutions ...

Cray adds NVIDIA Tesla K40 GPU accelerators to its complete line of supercomputing systems ...

Cray introduces framework for Hadoop enabling the Cray XC30 supercomputer for scientific Big Data ...

INCITE grants awarded to 59 computational research projects ...

TotalView provides open early access of massive scale debugging ...

Launch of E-Biothon, a networked platform for the acceleration and advancement of bioinformatics research

19 Nov 2013 Paris - CNRS, IBM, Inria, the Institut Français de Bioinformatique and the innovative start-up SysFera are rolling out E-Biothon, an experimental Cloud platform to help speed up and advance research in biology, health and the environment. With a 200-terabyte (1012 bytes) storage capacity and a computing power of 28 teraflops (1012 flops), E-Biothon will provide an application portal and significant processing capacity to both researchers and the scientific community as a whole. This will make it possible to tackle the processing of today's complex biological data in order to develop tomorrow's application software.

France has always been at the forefront of medical research, particularly as regards major "epidemics" and pathologies of our time such as AIDS, cancer and diabetes. The genetic and proteomic analysis of viruses or of patients appears to play an increasing role in helping to develop new treatments. Recent technological advances, such as high-throughput sequencers, enable biology researchers to have access to massive amounts of raw data - petabytes of data are generated every year - on the composition of viruses, bacteria and the human species. Analysing this data to make sense of it is a daunting task that requires huge computer processing capacity.

To speed up processing, CNRS, IBM, lnria, the Institut Français de Bioinformatique and SysFera have joined forces to give researchers access to this Cloud platform, hosted at Idris, the CNRS very high performance intensive numerical computing centre located in Orsay, near Paris. Combining an application portal with very large computing power, it will make it possible to develop software and applications that will spur on research in biology and health, in particular in genomics and proteomics. The objective is to improve knowledge of genetic diseases as rapidly as possible, particularly neuromuscular diseases, and to drastically speed up the discovery of new breakthrough treatments. The platform also aims to accelerate research in ecology-biodiversity in order to enhance our understanding of the environment.

The platform comprises high performance IBM Blue Gene/P systems, representing a power of 28 teraflops associated with 200 terabytes of storage, and the SysFera-DS solution, which offers users a web portal for accessing the computational resources. Through this portal, researchers have access to a complete working environment allowing them to easily carry out computerized processing related to analyses in the fields of genomics, proteomics and metabolomics, and then manage the data generated, all through a simple web browser.

Three pilot applications have been rolled out in the first phase, notably in the fields of epidemiology and biodiversity. Following this initial pilot phase, the objective now is to open up this platform, supported by France Grilles and the Institut Français de Bioinformatique, to the scientific community as a whole.

Source: CNRS

Back to Table of contents

Primeur weekly 2013-11-25

Special

Xyratex announces ClusterStor 9000 ...

Univa Corporation and Penguin Computing announce reseller agreement ...

SysFera-DS Version 4.0 for HPC management improves remote visualization and extends Cloud support ...

Supermicro debuts powerful 4U 8x GPU SuperServer optimized for the new NVIDIA Tesla K40 GPU accelerator ...

NVIDIA launches world's fastest accelerator for supercomputing and Big Data analytics ...

Numascale shared memory cluster set to unlock massive data sets and ease HPC programming at University of Oslo and throughout Europe ...

HP drives clients to TOP500 list of fastest supercomputers ...

IBM ranked no. 1 on the Graph500 supercomputing list ...

University of Reims Romeo supercomputer ranked 5th of the Green500 list ...

SGI supports new NVIDIA Tesla K40 GPU accelerators delivering 10x performance ...

Mellanox Connect-IB FDR InfiniBand adapters with NVIDIA GPUDirect RDMA technology provide superior GPU-based cluster performance ...

Adaptive Computing introduces Moab Task Manager to increase efficiency of short computing jobs ...

DataDirect Networks Web Object Scaler to provide a multi-PB storage Cloud to enable collaborative data sharing across Florida research universities ...

KALRAY announces world's first hyper-scalable 1000+ cores MIMD processor architecture for next generation exaflop supercomputers ...

IBM and NVIDIA to supercharge corporate data centre applications and next-generation supercomputers ...

Research institutions push the boundaries of supercomputing with Dell ...

Scientists "burst" supercomputing record with bubble collapse simulation ...

UK Atomic Weapons Establishment advances science-based programme with SGI supercomputers ...

Argonne and RIKEN sign MOU in support of petascale computing ...

Penguin Computing updates densest GPU compute solution with NVIDIA Tesla K40 GPU accelerators ...

International networks to aid global research collaborations in climate, bioinformatics and computer science ...

Convey Computer to OEM Dell servers to accelerate data intensive applications for data centres ...

Mellanox Connect-IB FDR InfiniBand adapters accelerate Purdue University's supercomputer to petascale-class performance ...

Penguin Computing announces world's densest X86 supercomputers that leverage OCP designs ...

The Cloud

Altair announces general availability of Display Manager ...

Cloud Software Programme published a definitive guide to success in the Cloud ...

Desktop Grids

New BOINC installer includes VirtualBox ...

EuroFlash

Open Knowledge promotes fast, creative innovation across sectors ...

Cray awarded $30 million contract to expand the Cray XC30 supercomputer at the High Performance Computing Center of University of Stuttgart ...

CSC deploys an energy-efficient Bull supercomputer ...

Scientists from Forschungszentrum Juelich announce the successful installation of a first Blue Gene Active Storage system worldwide ...

Launch of E-Biothon, a networked platform for the acceleration and advancement of bioinformatics research ...

Database consulting company MonetDB Solutions for Big Data newest spin-off CWI ...

Altair raises the bar for secure HPC workload management ...

USFlash

The University of Tsukuba in Japan puts Cray CS300 cluster supercomputer into production ...

SGI and Extreme Networks partner to bring high performance Big Data and Hadoop solutions ...

Cray adds NVIDIA Tesla K40 GPU accelerators to its complete line of supercomputing systems ...

Cray introduces framework for Hadoop enabling the Cray XC30 supercomputer for scientific Big Data ...

INCITE grants awarded to 59 computational research projects ...

TotalView provides open early access of massive scale debugging ...