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Primeur weekly 2020-10-12

Focus

Future of European HPC and TOP500 in the picture at Russian Supercomputing Days ...

Two European approaches for modelling and mapping the COVID-19 pandemic ...

European-Brazilian consortium joins forces in advanced HPC wind turbine simulations for use in on- and offshore wind energy farms ...

Exascale supercomputing

PerMedCoE: Exascale-ready cell-level simulations for European Personalised Medicine ...

Quantum computing

New algorithm could unleash the power of quantum computers ...

Light Rider unveils quantum LiFi technology to create next-generation network security ...

Research and Markets to issue report on Quantum Networking: A Ten-year Forecast and Opportunity Analysis ...

Focus on Europe

Linköping University chooses Atos to build Sweden's largest supercomputer for AI ...

Atos inaugurates BullSequana XH2000 at CSC - the fastest supercomputer in the Nordics ...

Making supercomputers carbon neutral - CSC's data centre will be powered with hydro-electricity supplied by Vattenfall ...

Middleware

Verne Global achieves Dell Technologies Platinum Partner status ...

Altair acquires M-Base Engineering + Software GmbH, leader in plastics material data and technology ...

Hardware

CoolIT Systems launches rack DLC CHx200 CDU ...

NVIDIA introduces new family of BlueField DPUs to bring breakthrough networking, storage and security performance to every data centre ...

CoolIT prevails against Asetek, PTAB determines no challenged claims unpatentable ...

CMKL University implementing DDN and NVIDIA solution for AI-centric supercomputing and research ...

OpenFive and AnalogX to provide optimized Chip-to-Chip interface IP solutions ...

Defense and intelligence executive Melvin Cordova joined Tachyum Government Corp. ...

TrendForce announces tech industry trends for 2021 ...

Cerebras Systems appoints Tony Maslowski as Chief Financial Officer ...

DoD deploys three Liqid composable supercomputing facilities powered by NVIDIA A100 GPU computing and NVIDIA Mellanox HDR 200Gb/s InfiniBand smart networking ...

Panasas ActiveStor data storage supports materials research for dozens of scientists conducting intensive 4D modelling studies at MINES ParisTech University ...

Pavilion expands a US federal deployment, bringing the multi-year relationship to an eight-figure investment, to safeguard American lives ...

C-DAC to commission India's fastest HPC-AI supercomputer PARAM Siddhi - AI with NVIDIA ...

NVIDIA announces partnership with GSK's AI-powered Lab for Discovery of Medicines and Vaccines ...

NVIDIA announces ready-made NVIDIA DGX SuperPODs, offered by global network of certified partners ...

Supermicro expands its portfolio bringing highest density 4U server with NVIDIA HGX A100s 8-GPU and 8U SuperBlade supporting 20 A100 PCI-E GPUs ...

Supermicro to support NVIDIA Bluefield-2 DPU on industry's broadest portfolio of servers optimized for accelerated computational workloads in AI, AR/DR, and data analytics ...

Applications

NVIDIA building large computing system, dedicated to AI research in health care ...

An electrical trigger fires single, identical photons ...

Could megatesla magnetic fields be realized on Earth? ...

Top computer scientists and statisticians launch Foundations of Data Science conference ...

Comet supercomputer calculations boost understanding of immune system ...

Corona supercomputer gets funding for COVID-19 work ...

Steady progress in the battle against COVID-19 at Brookhaven National Laboratory ...

Texascale Days at TACC: Eight research teams test their codes at the largest scale on Frontera ...

Supercomputing helps advance predictive science, exascale computing ...

The Cloud

Inspur unveils Cloud SmartNIC solution based on NVIDIA DPU at GTC 2020 ...

PerMedCoE: Exascale-ready cell-level simulations for European Personalised Medicine


8 Oct 2020 Barcelona - Coordinated by the Barcelona Supercomputing Center (BSC) and funded by the European Commission, this recently launched HPC centre of excellence will optimise codes for cell-level simulations in HPC/Exascale and bridge the gap between organ and molecular simulations, thus contributing to the European Personalised Medicine Roadmap.

The next generation of Exascale supercomputers will become a necessary tool to treat diseases on an individual level and make one step forward in personalised medicine. The recently launched European HPC/Exascale Centre of Excellence in Personalised Medicine (PerMedCoE) will provide an efficient and sustainable infrastructure to support the development of personalised medicine by showcasing HPC/Exascale-upgraded use cases such as translating the consequences of single cell omics information into actionable molecular disease models.

One of the most significant contributions of PerMedCoE will be to scale-up cell-level simulations to HPC/Exascale level, which will fill the gap between the molecular- and organ-level simulations provided by other Centres of Excellence (CoEs) such as CompBioMed and BioExcel.

"PerMedCoE will boost the competitiveness of European personalised medicine and aims to become the community hub for Exascale-ready software in this domain", stated Alfonso Valencia, ICREA Research Professor, BSC Life Sciences Department Director and PerMedCoE Coordinator.

Personalised medicine opens unexplored frontiers to treating diseases at the individual level combining clinical and omics information. However, the performance of the current simulation software is still insufficient to tackle medical problems such as tumour evolution and response to treatment at the single-cell level or patient-specific treatments. For this reason, this European centre of excellence pursues the following main objectives:

  • To optimise key software for cell-level simulations to the new pre-exascale platforms to contribute to the European Personalised Medicine Roadmap.
  • To integrate personalised medicine into the new European HPC/Exascale ecosystem, by offering access to HPC/Exascale-adapted and optimised software.
  • To design and complete a comprehensive set of personalised medicine use cases to drive the development of cell-level simulations.
  • To build the basis for its sustainability by coordinating personalised medicine and HPC communities, and reaching out to industrial and academic end-users with use cases, training, expertise and best practices.

The centre will become the entry point to Exascale-ready cell-level simulation software, able to transform personal omics data into actionable mechanistic models of medical relevance, supporting developers and end-users with know-how and best practices. It will also connect simulation software developers with HPC, HTC and HPDA experts at the CoEs POP and HiDALGO, and work with other biomedical consortia such as ELIXIR and LifeTime, also connecting pre-exascale infrastructures hosted by supercomputing centres such as the BSC and CSC - IT Center for Science.

PerMedCoE is the HPC/Exascale Centre of Excellence for Personalised Medicine in Europe and aims to provide an efficient and sustainable entry point to the HPC/Exascale-upgraded methodology to translate omics information into actionable models of cellular functions of medical relevance. Coordinated by the Barcelona Supercomputing Center (BSC), this CoE has been awarded 5 million euro in funding from the European Commission and will run from 1 October 2020 to 30 September 2023. A range of 12 world-class academic and industry partners from across Europe are participating in the CoE: Barcelona Supercomputing Center (BSC), CSC - IT Center for Science, University of Luxembourg, Institut Curie, University Hospital Heidelberg, Atos Spain, KTH Royal Institute of Technology, European Molecular Biology Laboratory (EMBL), Centre for Genomic Regulation (CRG), Max Delbrück Center for Molecular Medicine (MDC), University of Ljubljana and ELEM Biotech.

Source: Barcelona Supercomputing Center - BSC

Back to Table of contents

Primeur weekly 2020-10-12

Focus

Future of European HPC and TOP500 in the picture at Russian Supercomputing Days ...

Two European approaches for modelling and mapping the COVID-19 pandemic ...

European-Brazilian consortium joins forces in advanced HPC wind turbine simulations for use in on- and offshore wind energy farms ...

Exascale supercomputing

PerMedCoE: Exascale-ready cell-level simulations for European Personalised Medicine ...

Quantum computing

New algorithm could unleash the power of quantum computers ...

Light Rider unveils quantum LiFi technology to create next-generation network security ...

Research and Markets to issue report on Quantum Networking: A Ten-year Forecast and Opportunity Analysis ...

Focus on Europe

Linköping University chooses Atos to build Sweden's largest supercomputer for AI ...

Atos inaugurates BullSequana XH2000 at CSC - the fastest supercomputer in the Nordics ...

Making supercomputers carbon neutral - CSC's data centre will be powered with hydro-electricity supplied by Vattenfall ...

Middleware

Verne Global achieves Dell Technologies Platinum Partner status ...

Altair acquires M-Base Engineering + Software GmbH, leader in plastics material data and technology ...

Hardware

CoolIT Systems launches rack DLC CHx200 CDU ...

NVIDIA introduces new family of BlueField DPUs to bring breakthrough networking, storage and security performance to every data centre ...

CoolIT prevails against Asetek, PTAB determines no challenged claims unpatentable ...

CMKL University implementing DDN and NVIDIA solution for AI-centric supercomputing and research ...

OpenFive and AnalogX to provide optimized Chip-to-Chip interface IP solutions ...

Defense and intelligence executive Melvin Cordova joined Tachyum Government Corp. ...

TrendForce announces tech industry trends for 2021 ...

Cerebras Systems appoints Tony Maslowski as Chief Financial Officer ...

DoD deploys three Liqid composable supercomputing facilities powered by NVIDIA A100 GPU computing and NVIDIA Mellanox HDR 200Gb/s InfiniBand smart networking ...

Panasas ActiveStor data storage supports materials research for dozens of scientists conducting intensive 4D modelling studies at MINES ParisTech University ...

Pavilion expands a US federal deployment, bringing the multi-year relationship to an eight-figure investment, to safeguard American lives ...

C-DAC to commission India's fastest HPC-AI supercomputer PARAM Siddhi - AI with NVIDIA ...

NVIDIA announces partnership with GSK's AI-powered Lab for Discovery of Medicines and Vaccines ...

NVIDIA announces ready-made NVIDIA DGX SuperPODs, offered by global network of certified partners ...

Supermicro expands its portfolio bringing highest density 4U server with NVIDIA HGX A100s 8-GPU and 8U SuperBlade supporting 20 A100 PCI-E GPUs ...

Supermicro to support NVIDIA Bluefield-2 DPU on industry's broadest portfolio of servers optimized for accelerated computational workloads in AI, AR/DR, and data analytics ...

Applications

NVIDIA building large computing system, dedicated to AI research in health care ...

An electrical trigger fires single, identical photons ...

Could megatesla magnetic fields be realized on Earth? ...

Top computer scientists and statisticians launch Foundations of Data Science conference ...

Comet supercomputer calculations boost understanding of immune system ...

Corona supercomputer gets funding for COVID-19 work ...

Steady progress in the battle against COVID-19 at Brookhaven National Laboratory ...

Texascale Days at TACC: Eight research teams test their codes at the largest scale on Frontera ...

Supercomputing helps advance predictive science, exascale computing ...

The Cloud

Inspur unveils Cloud SmartNIC solution based on NVIDIA DPU at GTC 2020 ...