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Primeur weekly 2011-10-24

Special

Interview with Tomi Ilijas from Arctur HPC centre in Slovenia ...

Exascale supercomputing

Fujitsu releases world's highest-performance file system ...

The Cloud

Bull announces bullion Cloud platform: the fast, cost-effective solution to build simple and secure private Clouds ...

Bull launches Le Cloud by Bull: a strategic approach, to achieve a smooth transition to the enterprise Cloud ...

IBM introduces new systems to accelerate smarter computing ...

HP speeds clients' Cloud evolution ...

New VMAXe enhancements deliver more powerful, trusted and efficient enterprise storage for VMware environments ...

VMware unveils management portfolio for the Cloud era ...

American Diversified Holdings Corporation Cloud networking subsidiary Rebel Networks to substantially expand operating capacity ...

Joint integration of EMC VPLEX and VMware vSphere delivers higher levels of availability and workload mobility ...

HP provides customers affordable route to Cloud with financing offer ...

Building a Cloud for High Performance Computing with OpenNebula ...

IEEE/ACM Utility and Cloud Computing Conference to issue Call for Participation ...

Desktop Grids

University of Westminster to hire reseach assistant in distributed, Grid and Cloud computing ...

EuroFlash

CURIE: the first large scale hybrid system available in PRACE ...

Dr. Maria Ramalho took appointment as PRACE Managing Director ...

Ryohin Keikaku expands HiQube deployment throughout Japanese retail store chain ...

Lightning strikes in the form of bits and bytes ...

UPC scientists perform first 3D simulations of nova explosions ...

USFlash

HP doubles customer base of 3PAR Utility Storage and scores world-record benchmark ...

Magnifying research: Scientists team together to upgrade supercomputer ...

SDSC and Calit2 awarded $1.4 million NSF grant for new bioinformatics tools ...

Indiana University awarded $1.5 million NSF grant for new national centre to support human genome research ...

Exa's PowerFLOW supports Cray XE6 supercomputers with excellent scalability to thousands of cores ...

Thomas Bogdan named president of University Corporation for Atmospheric Research ...

CCGrid 2012 to issue Call for Papers ...

Universities select HP to get to head of the class ...

Vertica announces Community Edition version of Vertica Analytic Database ...

Magnifying research: Scientists team together to upgrade supercomputer

18 Oct 2011 Manhattan - A group of Kansas State University scientists is boosting research across campus by making the largest supercomputer in the state even larger. The project also will benefit researchers at other schools in Kansas. The scientists, led by Daniel Andresen, associate professor of computing and information sciences, have recently received a three-year $700,000 grant from the National Science Foundation's Major Research Instrumentation Programme to upgrade the university's research computing cluster, called Beocat. The scientists also received $300,000 in matching funds from the university.

Beocat is a cluster of servers that provides computational support for large research projects and is located in the university's computing and information sciences department in the College of Engineering. The cluster's design type is called Beowulf, so the designers called the university's form Beocat in honour of the Kansas State University Wildcats.

Beocat supports research in four colleges and 12 to 15 departments across campus, and the upgrade will at least double its research capacities. While the average desktop or laptop has between two and four cores in its central processing unit, Beocat has 1,200 cores. It also has 10 machines that each have 64 gigabytes of memory - much more than the average two to four gigabytes that come with a desktop or laptop. The upgrade will give Beocat individual machines with 512 gigabytes to a terabyte of memory and more than 2,000 total cores.

"That's like 1,500 laptops stacked up or 1,000 desktops stacked up and working together", Daniel Andresen stated.

The extra memory will be especially helpful for some of the larger research projects across campus. For example, it takes about 50 gigabytes of space to analyze a single genome. A group of biologists on campus wants to analyze 5,000 genomes - a huge computing task that requires a lot of memory. But an upgraded Beocat will be able to handle such a large research load in a timely manner.

Beocat has about 400 users working on research in areas such as life sciences, genetics, chemistry and agriculture. Some of the supercomputer's projects have involved: looking at the flowering time of plants; understanding how water policies and practice changes affect the Ogallala Aquifer in western Kansas; and collaborating with the University of Kansas and the University of Oklahoma to study the effects of carbon flux and species migration.

Additionally, the supercomputer's work fits in with the university's 2025 vision, Daniel Andresen said. Having better on-campus resources, such as an upgraded supercomputer, will help faculty members produce more accurate and cost-effective research.

"This type of capacity will drive lab experiments as well as provide simulations", Daniel Andresen stated. "Research now involves theory, lab work and simulation, which is computer driven. This upgrade will help with simulation because you can model things first that might be very expensive before you actually apply them."

Not only does the supercomputer help scientists and researchers at Kansas State University, but researchers at colleges throughout the state of Kansas - including Emporia State University, Benedictine College and Bethany College - are also able to use the supercomputer.

"This supercomputer allows faculty to have better access to getting research done with their research dollars", Daniel Andresen stated. "It will also enable us to reach out and really have an impact on the community colleges and four-year institutions throughout the state. This will also help the Kansas work force because we are going to be graduating more people who actually know how to use these cutting edge technologies."

The group will start installing the upgraded equipment in the spring semester. The upgrade will involve faculty as well as students, particularly Adam Tygart, sophomore in computer science, Manhattan, who manages Beocat.

Other co-principal investigators on the project include: Doina Caragea, assistant professor of computing and information sciences; Brett Esry, university distinguished professor of physics; Walter Dodds, university distinguished professor of biology; and David Steward, professor of civil engineering. Senior personnel on the project include Jianhan Chen, assistant professor of biochemistry, and Christine Aikens, assistant professor of chemistry.

The National Science Foundation's Major Research Instrumentation Programme awards scientific and engineering instruments that are used across disciplines for research.
Source: Kansas State University

Back to Table of contents

Primeur weekly 2011-10-24

Special

Interview with Tomi Ilijas from Arctur HPC centre in Slovenia ...

Exascale supercomputing

Fujitsu releases world's highest-performance file system ...

The Cloud

Bull announces bullion Cloud platform: the fast, cost-effective solution to build simple and secure private Clouds ...

Bull launches Le Cloud by Bull: a strategic approach, to achieve a smooth transition to the enterprise Cloud ...

IBM introduces new systems to accelerate smarter computing ...

HP speeds clients' Cloud evolution ...

New VMAXe enhancements deliver more powerful, trusted and efficient enterprise storage for VMware environments ...

VMware unveils management portfolio for the Cloud era ...

American Diversified Holdings Corporation Cloud networking subsidiary Rebel Networks to substantially expand operating capacity ...

Joint integration of EMC VPLEX and VMware vSphere delivers higher levels of availability and workload mobility ...

HP provides customers affordable route to Cloud with financing offer ...

Building a Cloud for High Performance Computing with OpenNebula ...

IEEE/ACM Utility and Cloud Computing Conference to issue Call for Participation ...

Desktop Grids

University of Westminster to hire reseach assistant in distributed, Grid and Cloud computing ...

EuroFlash

CURIE: the first large scale hybrid system available in PRACE ...

Dr. Maria Ramalho took appointment as PRACE Managing Director ...

Ryohin Keikaku expands HiQube deployment throughout Japanese retail store chain ...

Lightning strikes in the form of bits and bytes ...

UPC scientists perform first 3D simulations of nova explosions ...

USFlash

HP doubles customer base of 3PAR Utility Storage and scores world-record benchmark ...

Magnifying research: Scientists team together to upgrade supercomputer ...

SDSC and Calit2 awarded $1.4 million NSF grant for new bioinformatics tools ...

Indiana University awarded $1.5 million NSF grant for new national centre to support human genome research ...

Exa's PowerFLOW supports Cray XE6 supercomputers with excellent scalability to thousands of cores ...

Thomas Bogdan named president of University Corporation for Atmospheric Research ...

CCGrid 2012 to issue Call for Papers ...

Universities select HP to get to head of the class ...

Vertica announces Community Edition version of Vertica Analytic Database ...