Back to Table of contents

Primeur weekly 2016-05-23

Crowd computing

Zika treatment search launched, fueled by IBM's World Community Grid ...

Quantum computing

Quantum Manifesto to call for one billion euro investment in European quantum computer ...

Focus on Europe

Lenovo helps the European Space Agency map the Milky Way ...

PRACEdays16 concludes with ambitions met and raised ...

GASPI tutorial at EPFL Lausanne ...

Hardware

Lincoln Laboratory establishes a supercomputing centre ...

Microsoft supports Sydney University quantum effort ...

Atos simplifies and speeds up implementation of Big Data solutions ...

Mellanox announces new executive appointments ...

DDN introduces Flashscale: game-changing performance and cost optimized all-flash array delivering 6 million IOPS in 4U for as low as $1/GB ...

Dell makes groundbreaking leap forward with uniquely adaptable, future-ready storage solutions ...

Applications

Funding to support development of the Virtual Physiological Human ...

Zika hackathon fights disease with Big Data ...

SGI rapidly surpasses 600 Terabyte milestone for total systems running SAP HANA ...

ANSYS introduces first Big Data and machine learning system for engineering simulation ...

Galaxy formation simulations benefit NASA's future space telescope ...

UTA prepares Titan supercomputer to process the data from quadrillions of proton collisions generated in the new Large Hadron Collider experiments ...

The Cloud

IBM Cloud first to offer latest NVIDIA GRID with Tesla M60 GPU, speeding up virtual desktop applications ...

Jabil speeds global collaboration with IBM Cloud ...

Univa announces Navops Command for managing enterprise container workload on Kubernetes distributions ...

Zika treatment search launched, fueled by IBM's World Community Grid


An Android app can now help your computing device hunt for a Zika cure. Sign up for The OpenZika project on IBM's World Community Grid that aims to find a cure for Zika. Credit: IBM.
19 May 2016 Armonk, San Diego, New Brunswick - IBM's World Community Grid and scientists are launching an international study to identify drug candidates to cure Zika, a fast spreading virus that the World Health Organization has declared a global public health emergency. IBM and a global team of scientists are inviting anyone with a computer or Android device to join the #OpenZika project. Volunteers don't need to provide time, expertise or money to help; they simply run an app on their Windows, Mac, Linux or Android devices that automatically performs virtual experiments for scientists whenever the machines are otherwise idle.

Through the OpenZika project, World Community Grid will power virtual experiments on compounds that could form the basis of antiviral drugs to cure the Zika virus, which has been linked to serious neurological disorders. With dramatically more speed than possible in a traditional lab, the project will screen compounds from existing molecule databases against models of Zika protein and crystal structures. Screening results will quickly be shared with the research community and general public. Promising compounds would then be tested in the collaborators' laboratories.

For the OpenZika project, World Community Grid is working with an international team of researchers led in Brazil by the Federal University of Goiás, and with support from Brazil's Oswaldo Cruz Foundation (Fiocruz); Rutgers University's New Jersey Medical School; Collaborations Pharmaceuticals Inc.; and the Skaggs School of Pharmacy and Pharmaceutical Sciences at the University of California San Diego.

Once the computer modelling phase of the project identifies a few promising candidate drugs, Jair Siqueira-Neto, PhD, assistant professor in the Skaggs School of Pharmacy, will use leading-edge robotic equipment to rapidly test them against real-world Zika virus.

"The best part of this project is that it's truly 'open' - we will share all of the data we gather with the research community and general public, further accelerating Zika virus research", Jair Siqueira-Neto stated. "What's more, researchers not already participating in OpenZika are invited to submit proposals to receive free computing power to support additional Zika projects."

"Enlisting the help of World Community Grid volunteers will enable us to computationally evaluate over 20 million compounds in just the initial phase and potentially up to 90 million compounds in future phases", stated Carolina Horta Andrade, Ph.D., adjunct professor at the Federal University of Goiás in Brazil and the lead researcher on the OpenZika project. "Running the OpenZika project on World Community Grid will allow us to greatly expand the scale of our project, and it will accelerate the rate at which we can obtain the results toward an antiviral drug for the Zika virus."

"Instead of having to wait a number of years, even decades potentially, to test all these compounds in order to find a few that could form the basis of antiviral drugs to cure Zika, we will perform these initial tests in a matter of months, just by using idle computing power that would otherwise go to waste", stated Alex Perryman, a research teaching specialist at Rutgers' New Jersey Medical School, in Professor Joel Freundlich's lab. Alex Perryman was selected as co-principal investigator of the OpenZika project, while Joel Freundlich serves as a key consultant.

The need for a treatment is acute as warmer weather approaches North America, creating an environment more conducive to Zika-carrying mosquitoes, and as international travelers contract and transmit the virus.

Other anti-viral research efforts also hold promise. For example, IBM Research and Singapore's Institute of Bioengineering and Nanotechnology announced that they have identified a macromolecule that could help prevent deadly viral infections such as Zika. IBM has provided its expertise and resources for other disease outbreaks, such as Ebola. For instance, IBM's World Community Grid launched a project on Ebola research.

In addition, IBM has helped governments track diseases outbreaks. The company provided a citizen engagement and analytics system in Sierra Leone that enables communities affected by Ebola to communicate their issues and concerns directly to the government. For that public health emergency, IBM Research also created opinion-based heat-maps which correlated public sentiment to reported outbreak locations. IBM scientists have created a free, open source tool that helps scientists and public health officials create, use and study spatial and temporal models of emerging infectious diseases such as Zika.

As part of its citizenship programme focused on innovative solutions to societal problems, IBM created World Community Grid in 2004 to address researchers' critical need for supercomputing power. Partially hosted on IBM's SoftLayer Cloud technology, World Community Grid provides massive amounts of supercomputing power to scientists, free of charge. It does this by harnessing the unused computing power of volunteers' computers and Android devices. More than three million computers and mobile devices used by nearly three quarters of one million people and 470 institutions across 80 countries have contributed virtual supercomputing power for more than two-dozen vitally important projects on World Community Grid over the last 11 years, at a value of more than $500 million.

Rutgers' Alex Perryman has had deep experience working with IBM's World Community Grid. From 2007 to 2013, he managed and performed the day-to-day duties required for FightAIDS@Home, the first biomedical computing project on World Community Grid. In 2011, Alex Perryman designed, developed and ran the grid's Global Online Fight Against Malaria (GO FAM) project, which has resulted in identifying promising tool compounds for treating malaria and drug-resistant tuberculosis.

In less than two years, GO FAM volunteers on the grid performed more than a billion docking jobs, which, Alex Perryman estimates, would have taken at least 100 years using the computer capacity found at most universities. The Freundlich lab has leveraged GO FAM data against tuberculosis drug targets, along with novel machine learning techniques they have developed, to seed novel therapeutic strategies.

World Community Grid has helped researchers identify new potential treatments for childhood cancer, identifying new materials for more efficient solar cells, and helping to identify how nanotechnology can filter water more efficiently. Many of these efforts might not have even been attempted without the free supercomputing power provided by IBM's World Community Grid.

To perform such computational experiments, OpenZika researchers are using a widely used virtual screening tool called AutoDock VINA, developed by the Olson laboratory at the Scripps Research Institute. At its core, World Community Grid is enabled by Berkeley Open Infrastructure for Network Computing (BOINC), an open source platform developed at the University of California, Berkeley and with support from the National Science Foundation.

Volunteers can support the OpenZika search for a cure by joining World Community Grid. IBM also invites researchers to submit research project proposals to receive this free resource.
Source: IBM, Rutgers University, University of California - San Diego

Back to Table of contents

Primeur weekly 2016-05-23

Crowd computing

Zika treatment search launched, fueled by IBM's World Community Grid ...

Quantum computing

Quantum Manifesto to call for one billion euro investment in European quantum computer ...

Focus on Europe

Lenovo helps the European Space Agency map the Milky Way ...

PRACEdays16 concludes with ambitions met and raised ...

GASPI tutorial at EPFL Lausanne ...

Hardware

Lincoln Laboratory establishes a supercomputing centre ...

Microsoft supports Sydney University quantum effort ...

Atos simplifies and speeds up implementation of Big Data solutions ...

Mellanox announces new executive appointments ...

DDN introduces Flashscale: game-changing performance and cost optimized all-flash array delivering 6 million IOPS in 4U for as low as $1/GB ...

Dell makes groundbreaking leap forward with uniquely adaptable, future-ready storage solutions ...

Applications

Funding to support development of the Virtual Physiological Human ...

Zika hackathon fights disease with Big Data ...

SGI rapidly surpasses 600 Terabyte milestone for total systems running SAP HANA ...

ANSYS introduces first Big Data and machine learning system for engineering simulation ...

Galaxy formation simulations benefit NASA's future space telescope ...

UTA prepares Titan supercomputer to process the data from quadrillions of proton collisions generated in the new Large Hadron Collider experiments ...

The Cloud

IBM Cloud first to offer latest NVIDIA GRID with Tesla M60 GPU, speeding up virtual desktop applications ...

Jabil speeds global collaboration with IBM Cloud ...

Univa announces Navops Command for managing enterprise container workload on Kubernetes distributions ...