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Primeur weekly 2019-04-15

Quantum computing

U.S. research team expands quantum network with successful long-distance entanglement experiment ...

2D gold quantum dots are atomically tunable with nanotubes ...

New algorithm optimizes quantum computing problem-solving ...

Brookhaven joins the IBM Q Network Hub at Oak Ridge National Lab ...

Focus on Europe

Taurus Group acquires HPC specialist ClusterVision, broadening its global value-added strategy ...

eInfraCentral calls for participation to EOSC community event on June 20, 2019 ...

A significant European supercomputing grant to nanoscience researchers for investigations of atomically precise nanocatalysts ...

WekaIO expands AI and HPC storage solutions in Central Europe ...

Exscalate helps Epidemics research ...

Middleware

Spectra announces new data mover for BlackPearl solution and certifies more BlackPearl clients ...

Hardware

Cray supercomputers to feature new Intel Xeon Scalable processors ...

Supermicro introduces over 100 resource-saving server and storage systems with new 2nd generation Intel Xeon Scalable processors ...

Spectra Logic announces new tape features and functionality, setting the standard for tape innovation ...

Fujitsu begins production of Post-K ...

Intel Optane technology and Intel QLC NAND technology come together on a single drive ...

Largest, fastest array of microscopic 'traffic cops' for optical communications ...

Applications

Melissa Cragin joins SDSC's Research Data Services Group ...

NVIDIA and American College of Radiology AI-LAB team to accelerate adoption of AI in diagnostic radiology across thousands of hospitals ...

TACC's supercomputers play role in Event Horizon Telescope's first-ever black hole image ...

ATOM Consortium combines forces with NVIDIA to accelerate AI in drug discovery ...

The Cloud

SDSC's Phylogenetics Science Gateway awarded NSF/Internet2 grant ...

HPE and Nutanix sign global agreement to deliver hybrid Cloud as a Service ...

HPE and Google Cloud partner to simplify hybrid Cloud ...

Atos announces Open Hybrid Cloud solution enabling enterprises to move to Google Cloud ...

Atos and CloudBees partner to provide modern application development on Google Cloud ...

Intel and Google Cloud announce strategic partnership to accelerate hybrid Cloud ...

Scientific computing in the Cloud gets down to Earth ...

SDSC's Phylogenetics Science Gateway awarded NSF/Internet2 grant


8 Apr 2019 San Diego - The widely used CyberInfrastructure for Phylogenetic REsearch (CIPRES) science gateway, based at the San Diego Supercomputer Center (SDSC) at UC San Diego, has been awarded a one-year Internet2 grant funded by the National Science Foundation (NSF). The grant will let gateway users take advantage of more powerful compute processors available from a commercial cloud provider to accelerate their scientific discoveries.

Internet2 leads a project called Exploring Clouds for Acceleration of Science (E-CAS) in partnership with representative commercial Cloud providers. The project is funded under a collaboration with the NSF to support academic-based researchers who can benefit from access to commercial Clouds. For SDSC's grant, the Cloud provider will be Amazon Web Services (AWS), a subsidiary of Amazon. Access to AWS will be free for researchers using CIPRES during the period of the award.

"This award will allow us to take the first step in Cloud bursting: to let users access the latest graphics processing units (GPUs) at AWS", stated SDSC Bioinformatics Researcher Mark Miller, principal investigator for CIPRES. "GPUs can speed up some CIPRES analyses by tens of times compared to traditional CPU cores. However, currently CIPRES has access to only a modest number of older-generation GPUs. The availability of more GPUs that are also faster will allow our users to ask much harder questions, and will increase research throughput and productivity as well."

CIPRES supports more than 10,000 researchers who are investigating a wide range of topics about life on earth, including how viruses and bacteria mutate through time, how many species are there are and how they work together to create functional ecosystems, and how animals and plants evolve and adapt to a changing environment.

Currently, CIPRES runs parallel versions of 17 widely used sequence alignment, tree inference, and population biology codes on SDSC's Comet supercomputer, which has both CPU cores and GPUs. Formed in 2009 under an NSF grant, CIPRES has delivered more than 100 million equivalent-core hours of compute time to scientists.

"The long term vision is to allow CIPRES users to Cloud burst to AWS compute resources for any analysis, including those on CPU cores as well as on GPUs. Demand for compute time via CIPRES currently exceeds 20 million core hours per year and is growing", stated Mark Miller. "That's a lot of time, but with so many users, we still have to limit the amount any individual can use. The ability to cloud burst to AWS for all codes will help us meet the growing demand for core hours as well as that for GPU hours."

To date, CIPRES has supported more than 35,000 scientists in producing 5,500 peer-reviewed papers published in journals such asNature,Cell,Science, andProceedings of the National Academy of Sciences(PNAS).

Internet2 is a member-driven advanced technology community founded in 1996 by the USA's leading higher education institutions. It operates the USA's largest and fastest, coast-to-coast research and education network to deliver advanced services that are accessed and secured by the community-developed trust and identity framework.

For more information, you can visit the NSF's E-CAS award.
Source: San Diego Supercomputer Center - SDSC

Back to Table of contents

Primeur weekly 2019-04-15

Quantum computing

U.S. research team expands quantum network with successful long-distance entanglement experiment ...

2D gold quantum dots are atomically tunable with nanotubes ...

New algorithm optimizes quantum computing problem-solving ...

Brookhaven joins the IBM Q Network Hub at Oak Ridge National Lab ...

Focus on Europe

Taurus Group acquires HPC specialist ClusterVision, broadening its global value-added strategy ...

eInfraCentral calls for participation to EOSC community event on June 20, 2019 ...

A significant European supercomputing grant to nanoscience researchers for investigations of atomically precise nanocatalysts ...

WekaIO expands AI and HPC storage solutions in Central Europe ...

Exscalate helps Epidemics research ...

Middleware

Spectra announces new data mover for BlackPearl solution and certifies more BlackPearl clients ...

Hardware

Cray supercomputers to feature new Intel Xeon Scalable processors ...

Supermicro introduces over 100 resource-saving server and storage systems with new 2nd generation Intel Xeon Scalable processors ...

Spectra Logic announces new tape features and functionality, setting the standard for tape innovation ...

Fujitsu begins production of Post-K ...

Intel Optane technology and Intel QLC NAND technology come together on a single drive ...

Largest, fastest array of microscopic 'traffic cops' for optical communications ...

Applications

Melissa Cragin joins SDSC's Research Data Services Group ...

NVIDIA and American College of Radiology AI-LAB team to accelerate adoption of AI in diagnostic radiology across thousands of hospitals ...

TACC's supercomputers play role in Event Horizon Telescope's first-ever black hole image ...

ATOM Consortium combines forces with NVIDIA to accelerate AI in drug discovery ...

The Cloud

SDSC's Phylogenetics Science Gateway awarded NSF/Internet2 grant ...

HPE and Nutanix sign global agreement to deliver hybrid Cloud as a Service ...

HPE and Google Cloud partner to simplify hybrid Cloud ...

Atos announces Open Hybrid Cloud solution enabling enterprises to move to Google Cloud ...

Atos and CloudBees partner to provide modern application development on Google Cloud ...

Intel and Google Cloud announce strategic partnership to accelerate hybrid Cloud ...

Scientific computing in the Cloud gets down to Earth ...