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Primeur weekly 2019-02-18

Focus

2018 - Another year on the Road to Exascale - Part III - Software and applications ...

EOSCpilot science demonstrators boost follow-up initiatives in federating European Open Science Cloud concept ...

Quantum computing

Questions in quantum computing: How to move electrons with light ...

Focus on Europe

Arm SVE Hackathon to focus on Arm Scalable Performance for HPC and ML ...

EuroHPC Summit Week 2019: PRACEdays19 Call for Contributions and Posters is open ...

PRACE Ada Lovelace Award nominations open ...

Middleware

Bright Computing selects XENON as an Asia Pacific Services Partner ...

Hardware

RIKEN issues call for proposals for the name of the post-K ...

Fujitsu receives order for massively parallel supercomputer system called Oakbridge-CX from the University of Tokyo ...

Cray reports 2018 full year and fourth quarter financial results ...

South African Weather Center doubles computing and triples storage system capacities with Cray ...

WekaIO Matrix cements its storage leadership with groundbreaking performance and latency results on SPEC SFS 2014 ...

NERSC tape archives make the move to Berkeley Lab's Shyh Wang Hall ...

NVIDIA announces financial results for fourth quarter and fiscal 2019 ...

Applications

CERIC-ERIC call for proposals is now open ...

CalTech researcher uses Blue Waters to model galactic atmospheres ...

Six research groups awarded new GLCPC allocations on Blue Waters supercomputer ...

Visualizing biomedical breakthroughs in data ...

Theories describe dynamically disordered solid materials ...

Dark fiber lays groundwork for long-distance earthquake detection and groundwater mapping ...

Vanderbilt University Medical Center researchers, supercomputing effort reveal antibody secrets ...

ORNL teams with Los Alamos and EPB to demonstrate next-generation grid security tech ...

The Cloud

IBM Watson now available anywhere ...

Visualizing biomedical breakthroughs in data


13 Feb 2019 Urbana-Champaign - Making sense of complex biological data is the daily routine for the VI-Bio group at the National Center for Supercomputing Applications (NCSA). Whether it be investigating the role of certain dietary interventions in the human microbiome, working to improve risk prediction in breast cancer, or even developing an app to connect cancer patients and caregivers, VI-Bio is constantly working to make data more accessible, culminating in visual analytic tools for studying genomic and related data.

What's not routine about this work, however, are the outcomes: the VI-Bio group applies machine learning approaches to analyze the data and transforms the abstract biological results into visual form.

"We take complex biological data and help researchers make sense of it", stated Senior Research Scientist Colleen Bushell. Identifying relevant features in these data and presenting the complexity in a visual form improves comprehension, she explains, which in turn leads to new discoveries and insights.

The VI-Bio group, which also includes Matt Berry, Peter Groves, Lisa Gatzke, Xiaoxia Liao, Michael Welge, and Loretta Auvil has multiple collaborators, including the Mayo Clinic and Northwestern University. They build professional quality software and apply their design methodology to create interactive data visualizations and complex user interfaces that allow researchers to execute machine learning analysis and study their results.

Several of Vi-Bios projects have led to new insights in human diseases including cancer, chronic pelvic pain, latent tuberculosis, and heart disease.

Source: National Center for Supercomputing Applications - NCSA

Back to Table of contents

Primeur weekly 2019-02-18

Focus

2018 - Another year on the Road to Exascale - Part III - Software and applications ...

EOSCpilot science demonstrators boost follow-up initiatives in federating European Open Science Cloud concept ...

Quantum computing

Questions in quantum computing: How to move electrons with light ...

Focus on Europe

Arm SVE Hackathon to focus on Arm Scalable Performance for HPC and ML ...

EuroHPC Summit Week 2019: PRACEdays19 Call for Contributions and Posters is open ...

PRACE Ada Lovelace Award nominations open ...

Middleware

Bright Computing selects XENON as an Asia Pacific Services Partner ...

Hardware

RIKEN issues call for proposals for the name of the post-K ...

Fujitsu receives order for massively parallel supercomputer system called Oakbridge-CX from the University of Tokyo ...

Cray reports 2018 full year and fourth quarter financial results ...

South African Weather Center doubles computing and triples storage system capacities with Cray ...

WekaIO Matrix cements its storage leadership with groundbreaking performance and latency results on SPEC SFS 2014 ...

NERSC tape archives make the move to Berkeley Lab's Shyh Wang Hall ...

NVIDIA announces financial results for fourth quarter and fiscal 2019 ...

Applications

CERIC-ERIC call for proposals is now open ...

CalTech researcher uses Blue Waters to model galactic atmospheres ...

Six research groups awarded new GLCPC allocations on Blue Waters supercomputer ...

Visualizing biomedical breakthroughs in data ...

Theories describe dynamically disordered solid materials ...

Dark fiber lays groundwork for long-distance earthquake detection and groundwater mapping ...

Vanderbilt University Medical Center researchers, supercomputing effort reveal antibody secrets ...

ORNL teams with Los Alamos and EPB to demonstrate next-generation grid security tech ...

The Cloud

IBM Watson now available anywhere ...