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Primeur weekly 2019-02-11

Focus

2018 - Another year on the Road to Exascale - Part II - Memory, interconnects and other technologies for exascale ...

German Research Data Infrastructure GeRDI offers service to manage data according to FAIR principles ...

Do not get lost in the Horizon 2020 labyrinth, use the Knowledge Base ...

Exascale supercomputing

Exascale computing is coming soon, but will scientific communities be ready to make use of it? ...

Quantum computing

Atos delivers one of the most powerful quantum simulators in the world to Hartree Centre in the UK ...

Argonne researchers develop new method to reduce quantum noise ...

Focus on Europe

State concept to high-performance computing: German universities are intensifying their cooperation ...

Barcelona Supercomputing Center coordinates an international project to share and reuse cancer genomic data at a global level ...

Middleware

ThinkParQ announces its Platinum Partnership with Pacific Teck ...

Software stack in a snapshot ...

Kalray launches ES3CAP as lead partner: a 22,2 million euro budget ambitious industrial project for the development of the future computing platform for intelligent systems ...

Hardware

DDN names RAID Inc. a preferred Lustre reseller ...

Tremend signs agreement with Mellanox ...

WekaIO places first on the Virtual Institute's IO-500 10 Node Challenge ...

Applications

Barcelona Supercomputing Center's ground-breaking collaboration with Global Parametrics supercharges its predictive climate-risk modelling ...

New geometric model improves predictions of fluid flow in rock ...

Modelling uncertain terrain with supercomputers ...

Supercomputing propels jet atomization research for industrial processes ...

NOAA and NCAR partner on new, state-of-the-art U.S. modelling framework ...

The Cloud

Newly launched ANSYS Cloud accelerates engineering productivity and business agility ...

OCRE enables easy Cloud usage through the European Open Science Cloud ...

Barcelona Supercomputing Center coordinates an international project to share and reuse cancer genomic data at a global level


7 Feb 2019 Barcelona - Barcelona Supercomputing Center (BSC) coordinates the EUCANCan project, which will foster the re-use of genomic data related to different types of cancer for biomedical research. The project, to start on February 11th, 2019 in Barcelona, is funded by the European Commission and the Canadian Institute of Health research and has been recently chosen as the reference project by the Global Alliance for Genomics and Health.

The volume of genomic data related to cancer has grown in an exponential way during the last years, but it has done so in an uncontrolled way. The different methods with which each centre generates, classifies and storages its data are the main bottleneck that researchers face when they need to extract knowledge from this huge volume of information. Very few research groups have the capacity to homogenize data coming from different studies to be able to group and revise them, and in so doing reaching new results. This causes that, in practical terms, massive data accumulation is not resulting in more possibilities to make new discoveries.

The target of EUCANCan is to break with these dynamics by homogenizing and standardizing the cancer data base of the centres that participate in this project, and establishing methods and processes that allow a more efficient use of data and that could be used as a reference model in genomic medicine internationally.

During the four years of the project, it is expected that EUCANCan will process and provide the scientific community with around 30-35 thousand patient samples from different types of cancer, coming from different nodes involved in this project.

Standardizing procedures and formats will let a combined data analysis to extract all the possible information and will boost, among others, the discovery of new biomarkers. "Increasing the analysis of data volume lets us see more clearly the genetic architecture of diseases and exponentially increases the possibility of making new discoveries", according to David Torrents, ICREA researcher, leader of the Computational Genomics Group of the Barcelona Supercomputing Center and coordinator of the EUCANCan project.

BSC has been able to determine the great opportunities that the massive re-use of data can provide. A clear example is the re-analysing of genetic data coming from five public data bases that allowed the identification of new genetic markers for type 2 diabetes risk, as shown in a Nature Communications article. In addition, the centre has the capacity of computing and data management that make it an optimal place to carry out this type of project.

The EUCANCan project will be carried out by a consortium with the participation of some of the world reference institutions of biomedicine genomics, including research centres, hospitals and experts on Law of Spain, France, Germany, The Netherlands and Canada.

The kick-off of the project will be a meeting to be held in Barcelona on February 11th, 2019.

Last January, the renowned Global Alliance for Genomics and Health gave EUCANCan the qualification of driver project in its objective of establishing both a legal framework and technical standards to share genomic data in a responsible way within the Human Rights.

The complete list of EUCANCan consortium partners includes:

  • Germany: Deutsches KrebsForschungsZentrum Heildelberg (DKZF), European Molecular Biology Laboratory (EMBL), Heidelberg's University Hospital (UKL-HD), The Charité - Berlin's University Hospital (UMB) , Heidelberg Academy of Sciences and Humanities (HAdW), LINQ management GmbH, Steinbeis GmbH.
  • Canada: Ontario Institute for Cancer Research (OICR), The Royal Institution for the Advancement of Learning / McGill University.
  • Spain: Barcelona Supercomputing Center (coordinator), Center for Genomic Regulation (CRG), Consortium Institute of Biomedical Research August Pi i Sunyer (IDIBAPS), Catalan Institute of Oncology (ICO), Private Foundation Institute of Oncological Research Vall d'Hebron (VHIO), University of the Basque Country / Euskal Herriko Unibertsitatea.
  • France: National Center for Scientific Research, Institut Curie.
  • The Netherlands: Hartwig Medical Foundation (HMF).
Source: Barcelona Supercomputing Center - BSC

Back to Table of contents

Primeur weekly 2019-02-11

Focus

2018 - Another year on the Road to Exascale - Part II - Memory, interconnects and other technologies for exascale ...

German Research Data Infrastructure GeRDI offers service to manage data according to FAIR principles ...

Do not get lost in the Horizon 2020 labyrinth, use the Knowledge Base ...

Exascale supercomputing

Exascale computing is coming soon, but will scientific communities be ready to make use of it? ...

Quantum computing

Atos delivers one of the most powerful quantum simulators in the world to Hartree Centre in the UK ...

Argonne researchers develop new method to reduce quantum noise ...

Focus on Europe

State concept to high-performance computing: German universities are intensifying their cooperation ...

Barcelona Supercomputing Center coordinates an international project to share and reuse cancer genomic data at a global level ...

Middleware

ThinkParQ announces its Platinum Partnership with Pacific Teck ...

Software stack in a snapshot ...

Kalray launches ES3CAP as lead partner: a 22,2 million euro budget ambitious industrial project for the development of the future computing platform for intelligent systems ...

Hardware

DDN names RAID Inc. a preferred Lustre reseller ...

Tremend signs agreement with Mellanox ...

WekaIO places first on the Virtual Institute's IO-500 10 Node Challenge ...

Applications

Barcelona Supercomputing Center's ground-breaking collaboration with Global Parametrics supercharges its predictive climate-risk modelling ...

New geometric model improves predictions of fluid flow in rock ...

Modelling uncertain terrain with supercomputers ...

Supercomputing propels jet atomization research for industrial processes ...

NOAA and NCAR partner on new, state-of-the-art U.S. modelling framework ...

The Cloud

Newly launched ANSYS Cloud accelerates engineering productivity and business agility ...

OCRE enables easy Cloud usage through the European Open Science Cloud ...