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Primeur weekly 2018-02-12

Quantum computing

New controls scale quantum chips ...

Controlling quantum interactions in a single material ...

Light controls two-atom quantum computation ...

Focus on Europe

TANGO project releases the Beta version of #TANGOToolbox to facilitate the effort of coding when targeting various hardware architectures ...

Nominations open for PRACE Ada Lovelace Award for HPC 2018 ...

Optalysys and The Earlham Institute achieve over 90% energy savings in breakthrough project applying optical processing for DNA sequence alignment ...

Middleware

Sylabs emerges from stealth to bring Singularity container technology to enterprise performance computing ...

Dell EMC expands server capabilities for software-defined, edge and high-performance computing ...

Hardware

Virtual reality helps explore the GPS of the mind ...

HiPerGator is the number 3 most powerful computer at a U.S. public university ...

Supermicro expands edge computing and network appliance portfolio with new high density SoC solutions ...

Supermicro introduces Silicon Valley's first 3-Megawatt clean energy automated rack integration facility ...

One Stop Systems introduces highest bandwidth, 5th generation NVMe ion accelerator flash storage array ...

Applications

University of Illinois researcher recognized with ACM Fellowship for contributions to parallel programming ...

After the storm: Simulating and visualizing extreme weather with XSEDE ...

XSEDE's Maverick helps explore next generation solar cells and LEDs ...

Optimized solutions for treating bone fractures will soon be reality ...

UMass Amherst computer science experts in artificial intelligence join IBM's AI Horizons Network ...

AI computer vision breakthrough IDs poachers in less than half a second ...

University of Chicago astrophysicists settle cosmic debate on magnetism of planets and stars ...

Portland State University joins nationwide program to develop brain-inspired computing ...

The Cloud

Ampere launches to accelerate hyperscale Cloud computing innovations ...

Oracle Cloud growth driving aggressive global expansion ...

Leading Cloud providers join with NSF to support data science frontiers ...

Smartly containing the Cloud increases computing efficiency, according to first-of-its-kind study ...

Optalysys and The Earlham Institute achieve over 90% energy savings in breakthrough project applying optical processing for DNA sequence alignment

12 Feb 2018 Glasshoughton, Norwich - Optalysys Ltd., a start-up commercialising light-speed optical co-processors for AI/deep learning, and world-leading genomic research institute The Earlham Institute, EI, have announced the successful completion of the Genetic Search System (GENESYS) project. The GENESYS project, which was granted GBP0.5 million in funding from Innovate UK, applied Optalysys's unique optical processing technology to perform large-scale DNA sequence alignment.

The collaboration set out to provide a scalable, energy-efficient solution to this challenging high-performance computing (HPC) task. The benchmark case study for the project aligned metagenomic reads sequenced from the Human Microbiome Project Mock Community - a well characterised microbial community - against a database consisting of 20 bacterial genomes totalling 64 million base pairs. The optical system exceeded the original targets delivering a 90 percent energy efficiency saving compared to the same test run on EI's HPC cluster, with an accuracy comparable to the highly sensitive nucleotide form of BLAST, BLASTn - part of a family of Basic Local Alignment Search Tools used to compare query sequences with a library or database of sequences.

The project results also revealed the technology holds significant promise for long-read sequence alignment, where speed improvements of several orders of magnitude over conventional software algorithms are possible - as well as in Deep Learning, specifically convolutional neural networks (CNNs).

The technology resulting from this project is launching in February 2018 as a Cloud-based platform to a closed beta programme of a select group of genomic institutes including EI (UK), the University of Manchester (UK), the University of York (UK), Oregon State University (USA), and Zealquest Scientific Technology Co. Ltd. in co-operation with the Shanghai Bioinformatics Center, Chinese Academy of Science.

"The collaboration with EI has been a great success", stated Dr. Nick New, founder and CEO of Optalysys. "We have demonstrated the technology at several international conferences including Advances in Genome Biology and Technology, Plant and Animal Genome Conference and Genome 10K/Genome Science, to an overwhelmingly enthusiastic response. We are looking forward to continuing our strong relationship with EI through the beta programme and beyond."

"Genomic institutes are being faced with analysing more and more data, and it is really exciting that new technologies like the Optalysys optical processing platform can support bioinformaticians processing data accurately, at a low cost and at high speeds", stated Dr. Daniel Mapleson, analysis pipelines project leader at EI who was the EI lead for the genomics tests during the project.

Jon Mitchener, innovation lead for emerging technologies, Innovate UK, stated: "GENESYS is a project that not only exemplifies the R&D done - combining novel optical HPC and deep learning AI techniques with a really important health-screening application, but also the way that support from Innovate UK can help accelerate the move from a prototype towards commercial product launch for a high-potential British SME like Optalysys."

Source: Optalysys

Back to Table of contents

Primeur weekly 2018-02-12

Quantum computing

New controls scale quantum chips ...

Controlling quantum interactions in a single material ...

Light controls two-atom quantum computation ...

Focus on Europe

TANGO project releases the Beta version of #TANGOToolbox to facilitate the effort of coding when targeting various hardware architectures ...

Nominations open for PRACE Ada Lovelace Award for HPC 2018 ...

Optalysys and The Earlham Institute achieve over 90% energy savings in breakthrough project applying optical processing for DNA sequence alignment ...

Middleware

Sylabs emerges from stealth to bring Singularity container technology to enterprise performance computing ...

Dell EMC expands server capabilities for software-defined, edge and high-performance computing ...

Hardware

Virtual reality helps explore the GPS of the mind ...

HiPerGator is the number 3 most powerful computer at a U.S. public university ...

Supermicro expands edge computing and network appliance portfolio with new high density SoC solutions ...

Supermicro introduces Silicon Valley's first 3-Megawatt clean energy automated rack integration facility ...

One Stop Systems introduces highest bandwidth, 5th generation NVMe ion accelerator flash storage array ...

Applications

University of Illinois researcher recognized with ACM Fellowship for contributions to parallel programming ...

After the storm: Simulating and visualizing extreme weather with XSEDE ...

XSEDE's Maverick helps explore next generation solar cells and LEDs ...

Optimized solutions for treating bone fractures will soon be reality ...

UMass Amherst computer science experts in artificial intelligence join IBM's AI Horizons Network ...

AI computer vision breakthrough IDs poachers in less than half a second ...

University of Chicago astrophysicists settle cosmic debate on magnetism of planets and stars ...

Portland State University joins nationwide program to develop brain-inspired computing ...

The Cloud

Ampere launches to accelerate hyperscale Cloud computing innovations ...

Oracle Cloud growth driving aggressive global expansion ...

Leading Cloud providers join with NSF to support data science frontiers ...

Smartly containing the Cloud increases computing efficiency, according to first-of-its-kind study ...