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Primeur weekly 2017-02-20

Focus

HPC expert Genias Benelux to show its skillful expertise in brandnew website ...

Are billion Euro Flagships the right way to finance innovative areas like graphene, human brain research and quantum computing? ...

Exascale supercomputing

Advanced fusion code led by PPPL selected to participate in Early Science Programmes on three new DOE Office of Science pre-exascale supercomputers ...

Focus on Europe

From robotics to particle physics: Data analytics gets the spotlight in Distinguished Talk series at ISC 2017 ...

A new spin on electronics ...

Data mining tools for personalized cancer treatment ...

Why host HPC in Iceland to tackle Big Data for life sciences at Earlham Insititute ...

Biological experiments become transparent - anywhere, any time ...

Middleware

IBM delivers new platform to help clients address storage challenges at massive scale ...

Hewlett Packard Enterprise unveils most significant 3PAR Flash storage innovations to date ...

Hardware

Tokyo Institute of Technology partners with DDN on Tsubame3.0 to build forward-looking AI and Big Data computing infrastructure ...

Mellanox demonstrates four times improvement in crypto performance with Innova IPsec 40G Ethernet network adapter ...

Supermicro launches BigTwin - the industry's highest performing Twin multi-node system supporting the full range of CPUs, maximum memory and all-flash NVMe ...

Applications

Researchers catch extreme waves with higher-resolution modelling ...

Researchers are creating software to 'clean' large datasets, making it easier for scientists and the public to use Big Data ...

Designing new materials from 'small' data ...

Success by deception ...

DNA computer brings 'intelligent drugs' a step closer ...

'Lossless' metamaterial could boost efficiency of lasers and other light-based devices ...

Perimeter Institute researchers apply machine learning to condensed matter physics ...

When treating brain aneurysms, two isn't always better than one ...

Real-time MRI analysis powered by supercomputers ...

Analyzing data for transportation systems using TACC's Rustler, XSEDE ECSS support ...

NCSA facilitates performance comparisons with China's nr. 1 supercomputer ...

IBM delivers Watson for cyber security to power cognitive security operations centres ...

The Cloud

Optimizing data centre placement and network design to strengthen Cloud computing ...

Dutch start-up solution impacts data centres ...

OpenFog Consortium releases landmark reference architecture for Fog computing ...

IBM brings machine learning to the private Cloud ...

IBM accelerates hybrid Cloud adoption by enabling channel partners to offer VMware solutions ...

Oracle launches Cloud service to help organisations integrate disparate data and drive real-time analytics ...

Data mining tools for personalized cancer treatment

Helsinki Challenge team iCombine collaborates with biobanks.13 Feb 2017 Helsinki - In the laboratories of Institute of Molecular Medicine Finland (FIMM), drug testing is done ex vivo. That is, various leukemia drugs are tested with patient samples instead of the patients themselves. This enables the researchers to test different drug combinations efficiently and without burdening the patient.

Jing Tang, a researcher working in FIMM, wants to integrate drug screening and genomic profiling data in order to find personalized treatment options for leukemia.

"Then, based on the patient’s genetic background, we would know what might be the best drug combination", Jing Tang clarified.

With their idea, Jing Tang and a cross-disciplinary team of researchers in medicine, biology and informatics from University of Helsinki and University of Turku were chosen as one of the semifinals of Helsinki Challenge, science-based idea competition and accelerator programme organised by University of Helsinki and several Finnish partner universities.

After several years of experiments the bottleneck in the project is data integration. Therefore it is integral to include informatics.

"We will develop a series of computational methods for drug combination prediction, modelling and data analysis. These methods will offer an improved efficiency to identify more effective combinatorial treatments for personalized medicine", Jing Tang stated.

In the future, it may be possible to apply the same model for personalized treatment of other cancer types and illnesses as well.

In order to make personalized medicine more accessible and applicable Jing Tang and his team intend to take Helsinki Challenge as an opportunity to build a larger community around the topic.

"For this we need people from various fields with the same aim - we want to give the patient the right drug the right time. That will also save costs."

Source: University of Helsinki

Back to Table of contents

Primeur weekly 2017-02-20

Focus

HPC expert Genias Benelux to show its skillful expertise in brandnew website ...

Are billion Euro Flagships the right way to finance innovative areas like graphene, human brain research and quantum computing? ...

Exascale supercomputing

Advanced fusion code led by PPPL selected to participate in Early Science Programmes on three new DOE Office of Science pre-exascale supercomputers ...

Focus on Europe

From robotics to particle physics: Data analytics gets the spotlight in Distinguished Talk series at ISC 2017 ...

A new spin on electronics ...

Data mining tools for personalized cancer treatment ...

Why host HPC in Iceland to tackle Big Data for life sciences at Earlham Insititute ...

Biological experiments become transparent - anywhere, any time ...

Middleware

IBM delivers new platform to help clients address storage challenges at massive scale ...

Hewlett Packard Enterprise unveils most significant 3PAR Flash storage innovations to date ...

Hardware

Tokyo Institute of Technology partners with DDN on Tsubame3.0 to build forward-looking AI and Big Data computing infrastructure ...

Mellanox demonstrates four times improvement in crypto performance with Innova IPsec 40G Ethernet network adapter ...

Supermicro launches BigTwin - the industry's highest performing Twin multi-node system supporting the full range of CPUs, maximum memory and all-flash NVMe ...

Applications

Researchers catch extreme waves with higher-resolution modelling ...

Researchers are creating software to 'clean' large datasets, making it easier for scientists and the public to use Big Data ...

Designing new materials from 'small' data ...

Success by deception ...

DNA computer brings 'intelligent drugs' a step closer ...

'Lossless' metamaterial could boost efficiency of lasers and other light-based devices ...

Perimeter Institute researchers apply machine learning to condensed matter physics ...

When treating brain aneurysms, two isn't always better than one ...

Real-time MRI analysis powered by supercomputers ...

Analyzing data for transportation systems using TACC's Rustler, XSEDE ECSS support ...

NCSA facilitates performance comparisons with China's nr. 1 supercomputer ...

IBM delivers Watson for cyber security to power cognitive security operations centres ...

The Cloud

Optimizing data centre placement and network design to strengthen Cloud computing ...

Dutch start-up solution impacts data centres ...

OpenFog Consortium releases landmark reference architecture for Fog computing ...

IBM brings machine learning to the private Cloud ...

IBM accelerates hybrid Cloud adoption by enabling channel partners to offer VMware solutions ...

Oracle launches Cloud service to help organisations integrate disparate data and drive real-time analytics ...