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Primeur weekly 2016-02-08

Focus

Reaching towards fully-integrated 3D tomography using new generation of algorithms and high performant scanning equipment and GPU clusters ...

Whole genome sequencing using HPC clusters in project MinE to find a cure for ALS ...

Exascale supercomputing

How to fit ten million computers into a single Supercomputer? The ExaNeSt project paves the way. European consortium becomes the trailblazer in the development of the most challenging architectures ...

Focus on Europe

Europe and Brazil join forces to improve the efficiency of the energy sector with HPC ...

Upcoming e-IRG Workshop will focus on the Progress of the e-Infrastructure Commons ...

CCRT boosts industrial innovation with a petascale supercomputer from Bull ...

Middleware

Ellexus launches tool to load balance shared storage called Mistral ...

Frame unveils powerful new visual supercomputer in the Cloud ...

Hardware

Poznan Supercomputing & Networking Center and Huawei launch HPC cluster, liquid cooled by CoolIT Systems ...

DDN WOS object storage software wins 2016 Storage Visions Award for secure, collaborative Cloud storage ...

Auburn University unveils $1 million supercomputer and initiates new technology acquisition plan ...

AMD reveals world's first hardware-virtualized GPU product line ...

High Performance Computing (HPC) market worth 36.62 billion USD by 2020 ...

Mellanox promotes Amit Katz to Vice President of Ethernet Switch Sales ...

Applications

Ofiice of Naval Research-sponsored technology simulates how legs bleed ...

Anton 2 supercomputer at PSC will increase speed and size of molecular simulations ...

NCSA awarded grant to examine effective practices in industrial HPC ...

A stellar collaboration: Supercomputing and NASA's IRIS Observatory ...

Carnegie Mellon joins IARPA project to reverse-engineer brain algorithms ...

Bionik Laboratories to utilize machine learning and analytics to improve neurological rehabilitation ...

IBM Watson Ecosystem opens for business in India ...

American Heart Association, IBM Watson Health and Welltok team up to transform heart health ...

The Cloud

Nimbix addresses enterprise call for high-performance computing with executive sales hire ...

IBM launches Cloud data and analytics marketplace for developers ...

IBM closes deal to acquire The Weather Company's product and technology businesses ...

Anton 2 supercomputer at PSC will increase speed and size of molecular simulations

3 Feb 2016 Pittsburgh - A $1.8-million National Institutes of Health grant to the Pittsburgh Supercomputing Center (PSC) will make a next-generation Anton 2 supercomputer developed by D. E. Shaw Research (DESRES) available to the biomedical research community. A specialized system for modelling the function and dynamics of biomolecules, the Anton 2 machine at PSC will be the only one of its kind publicly available to U.S. scientists. The grant also extends the operation of the Anton 1 supercomputer currently at PSC until the new Anton 2 is deployed, expected in the Fall of 2016.

"Many life processes important to understanding the molecular basis of cellular events occur over timescales exceeding a millisecond in length", stated Phil Blood, principal investigator of the new grant and senior computational scientist at PSC. "Anton 2's performance for molecular simulation will exceed that of current general-purpose supercomputing systems by orders of magnitude, enabling the study of biological processes not otherwise possible and offering new possibilities in drug discovery and development."

Molecular dynamics simulations can provide insights into the behavior of proteins, cell membranes, nucleic acids and other molecules at the atomic scale. But even the most advanced general-purpose supercomputers struggle to simulate beyond the microsecond level - a thousand times shorter than the millisecond level - without taking months of computational time. Anton has changed this, giving researchers practical access to simulations at far longer timescales.

The Anton 1 supercomputer that has been in use at PSC since 2010 has been a great success and has so far enabled 277 simulation projects by 127 different PIs across the US and resulted in more than 120 peer-reviewed research papers. Three of these studies appeared in the scientific journalNature, one of the international scientific community's premier publications.

The new 128-node Anton 2 will expand on the power and capabilities of the Anton 1 currently at PSC, increasing simulation speed approximately four-fold and enabling the simulation of biomolecular systems with around five times as many atoms as was possible using the previous machine. These capabilities will allow researchers to study larger biomolecules on timescales that weren't previously accessible to molecular dynamics modelling.

As with Anton 1, DESRES will provide the Anton 2 system without cost for non-commercial use by U.S. researchers. Time on the machine is expected to be allotted on the basis of research proposals submitted to an independent expert committee convened by the National Research Council at the National Academy of Sciences. More information on the Anton project at PSC can be found at the Anton -dedicated web page.
Source: Pittsburgh Supercomputing Center - PSC

Back to Table of contents

Primeur weekly 2016-02-08

Focus

Reaching towards fully-integrated 3D tomography using new generation of algorithms and high performant scanning equipment and GPU clusters ...

Whole genome sequencing using HPC clusters in project MinE to find a cure for ALS ...

Exascale supercomputing

How to fit ten million computers into a single Supercomputer? The ExaNeSt project paves the way. European consortium becomes the trailblazer in the development of the most challenging architectures ...

Focus on Europe

Europe and Brazil join forces to improve the efficiency of the energy sector with HPC ...

Upcoming e-IRG Workshop will focus on the Progress of the e-Infrastructure Commons ...

CCRT boosts industrial innovation with a petascale supercomputer from Bull ...

Middleware

Ellexus launches tool to load balance shared storage called Mistral ...

Frame unveils powerful new visual supercomputer in the Cloud ...

Hardware

Poznan Supercomputing & Networking Center and Huawei launch HPC cluster, liquid cooled by CoolIT Systems ...

DDN WOS object storage software wins 2016 Storage Visions Award for secure, collaborative Cloud storage ...

Auburn University unveils $1 million supercomputer and initiates new technology acquisition plan ...

AMD reveals world's first hardware-virtualized GPU product line ...

High Performance Computing (HPC) market worth 36.62 billion USD by 2020 ...

Mellanox promotes Amit Katz to Vice President of Ethernet Switch Sales ...

Applications

Ofiice of Naval Research-sponsored technology simulates how legs bleed ...

Anton 2 supercomputer at PSC will increase speed and size of molecular simulations ...

NCSA awarded grant to examine effective practices in industrial HPC ...

A stellar collaboration: Supercomputing and NASA's IRIS Observatory ...

Carnegie Mellon joins IARPA project to reverse-engineer brain algorithms ...

Bionik Laboratories to utilize machine learning and analytics to improve neurological rehabilitation ...

IBM Watson Ecosystem opens for business in India ...

American Heart Association, IBM Watson Health and Welltok team up to transform heart health ...

The Cloud

Nimbix addresses enterprise call for high-performance computing with executive sales hire ...

IBM launches Cloud data and analytics marketplace for developers ...

IBM closes deal to acquire The Weather Company's product and technology businesses ...